Basic Information
Locus ID:
gene-LOC107007104
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
poly(A) polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 80836066 | 80842914 | + | gene-LOC107007104 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 73,880.46 Da | 52.78 | 83.00 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 97 | 252 | 8.89454E-28 | - |
| Pfam | PF01909 | Nucleotidyltransferase domain | 131 | 206 | 1.2E-7 | IPR002934 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 409 | 467 | 5.7E-12 | IPR007010 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 58 | 405 | 2.5E-91 | IPR007012 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 56 | 251 | 3.11E-50 | IPR043519 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 409 | 534 | 2.35E-35 | IPR011068 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 282 | 405 | 8.63E-48 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 409 | 524 | 2.9E-26 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 58 | 404 | 5.6E-135 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 90 | 246 | 5.6E-135 | IPR043519 |
| PIRSF | PIRSF018425 | PolyA_polymerase | 45 | 645 | 1.4E-199 | IPR014492 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 535 | 649 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 546 | 584 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 586 | 634 | - | - |
| Coils | Coil | Coil | 79 | 99 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_015061061.1 | nuclear poly(A) polymerase 4 isoform X1 [Solanum pennellii] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology