Basic Information
Locus ID:
gene-LOC107007094
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
DNA (cytosine-5)-methyltransferase CMT3-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 83059985 | 83065945 | + | gene-LOC107007094 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 99,161.95 Da | 37.88 | 74.66 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04716 | BAH_plantDCM_I | 220 | 340 | 1.96637E-59 | - |
| CDD | cd18635 | CD_CMT3_like | 483 | 539 | 3.40382E-29 | - |
| Pfam | PF01426 | BAH domain | 223 | 329 | 5.6E-9 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 549 | 878 | 6.7E-26 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 484 | 538 | 4.5E-11 | IPR023780 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 370 | 880 | 4.63E-68 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 478 | 538 | 1.83E-12 | IPR016197 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 326 | 705 | 5.2E-163 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 706 | 865 | 7.5E-63 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 160 | 325 | 4.5E-48 | IPR043151 |
| SMART | SM00439 | BAH_4 | 221 | 340 | 7.2E-11 | IPR001025 |
| SMART | SM00298 | chromo_7 | 483 | 542 | 9.7E-8 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 369 | 883 | 39.218765 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 221 | 340 | 16.386791 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 484 | 537 | 13.933101 | IPR000953 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 507 | 527 | - | IPR023779 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 554 | 566 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 643 | 656 | 5.8E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 597 | 611 | 5.8E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 370 | 386 | 5.8E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 458 | 480 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 462 | 480 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_027769458.1 | DNA (cytosine-5)-methyltransferase CMT3-like [Solanum pennellii] | 0 |
| A0A0P0VUY4 | DNA (cytosine-5)-methyltransferase CMT1 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology