Basic Information
Locus ID:
gene-LOC107006844
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Rho GTPase-activating protein 7-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 3126204 | 3144563 | + | gene-LOC107006844 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 96,029.93 Da | 53.20 | 75.13 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00821 | PH | 21 | 120 | 4.41431E-12 | - |
| CDD | cd00159 | RhoGAP | 181 | 318 | 9.408E-34 | - |
| Pfam | PF00620 | RhoGAP domain | 181 | 325 | 1.3E-30 | IPR000198 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 612 | 692 | 2.8E-21 | IPR025757 |
| Pfam | PF00169 | PH domain | 20 | 124 | 1.4E-12 | IPR001849 |
| SUPERFAMILY | SSF50729 | PH domain-like | 18 | 123 | 2.22E-17 | - |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 181 | 375 | 7.46E-34 | IPR008936 |
| Gene3D | G3DSA:2.30.29.30 | - | 10 | 126 | 1.0E-16 | IPR011993 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 150 | 374 | 1.8E-40 | IPR008936 |
| SMART | SM00233 | PH_update | 19 | 127 | 2.1E-15 | IPR001849 |
| SMART | SM00324 | RhoGAP_3 | 178 | 369 | 3.2E-26 | IPR000198 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 172 | 372 | 29.502565 | IPR000198 |
| ProSiteProfiles | PS50003 | PH domain profile. | 18 | 125 | 15.2083 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 552 | 571 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 750 | 768 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 741 | 798 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 552 | 572 | - | - |
| Coils | Coil | Coil | 602 | 636 | - | - |
| Coils | Coil | Coil | 823 | 850 | - | - |
| Coils | Coil | Coil | 201 | 221 | - | - |
| Coils | Coil | Coil | 661 | 695 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_015060847.1 | rho GTPase-activating protein 7-like isoform X1 [Solanum pennellii] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology