Basic Information
Locus ID:
gene-LOC107006315
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 49287167 | 49289999 | + | gene-LOC107006315 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 47,214.88 Da | 55.19 | 53.96 | -0.89 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13963 | Transposase-associated domain | 3 | 83 | 5.3E-17 | IPR029480 |
| Pfam | PF03004 | Plant transposase (Ptta/En/Spm family) | 164 | 290 | 6.5E-15 | IPR004252 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 364 | 414 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 201 | - | - |
| Coils | Coil | Coil | 316 | 350 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_015060383.1 | uncharacterized protein LOC107006315 [Solanum pennellii] | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda glauca | 1 | Sgl36013 |
| Solanaceae | Lycium barbarum | 35 | gene-LOC132601393, gene-LOC132607984, gene-LOC132608722 ... |
| Solanaceae | Solanum chilense | 11 | SOLCI000202400, SOLCI000775100, SOLCI001269100 ... |
| Solanaceae | Solanum pennellii | 18 | gene-LOC107001376, gene-LOC107003998, gene-LOC107006315 ... |