Basic Information
Locus ID:
gene-LOC107005746
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 80448487 | 80454187 | - | gene-LOC107005746 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.53 | 32,836.14 Da | 49.98 | 60.17 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 30 | 115 | 2.22263E-42 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 208 | 272 | 5.02785E-19 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 33 | 115 | 2.9E-19 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 208 | 275 | 5.1E-14 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 205 | 278 | 3.14E-21 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 23 | 121 | 1.57E-29 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 193 | 284 | 9.7E-21 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 12 | 127 | 4.4E-26 | IPR036431 |
| SMART | SM01014 | ARID_2 | 25 | 115 | 1.6E-25 | - |
| SMART | SM00501 | bright_3 | 29 | 120 | 5.5E-29 | IPR001606 |
| SMART | SM00398 | hmgende2 | 207 | 276 | 5.1E-16 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 28 | 119 | 24.461987 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 208 | 275 | 15.218019 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 212 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_015059886.1 | high mobility group B protein 9 [Solanum pennellii] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology