Basic Information
Locus ID:
gene-LOC107005692
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Belongs to the disease resistance NB-LRR family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 6809268 | 6821193 | + | gene-LOC107005692 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 192,068.92 Da | 44.94 | 98.77 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00931 | NB-ARC domain | 158 | 392 | 7.0E-46 | IPR002182 |
| SUPERFAMILY | SSF52058 | L domain-like | 466 | 991 | 4.15E-28 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 1323 | 1597 | 1.02E-16 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 143 | 406 | 6.96E-46 | IPR027417 |
| SUPERFAMILY | SSF52047 | RNI-like | 1006 | 1289 | 8.89E-20 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 993 | 1152 | 2.0E-10 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1461 | 1621 | 3.3E-10 | IPR032675 |
| Gene3D | G3DSA:1.10.10.10 | - | 391 | 477 | 6.4E-6 | IPR036388 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1292 | 1460 | 7.6E-11 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 824 | 992 | 2.2E-8 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 480 | 713 | 3.7E-23 | IPR032675 |
| Gene3D | G3DSA:1.10.8.430 | - | 304 | 390 | 1.4E-17 | IPR042197 |
| Gene3D | G3DSA:3.40.50.300 | - | 130 | 302 | 3.7E-29 | IPR027417 |
| PRINTS | PR00364 | Disease resistance protein signature | 672 | 688 | 2.8E-16 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 171 | 186 | 2.8E-16 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 245 | 259 | 2.8E-16 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 338 | 352 | 2.8E-16 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1650 | 1680 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1642 | 1680 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27190.1 | NB-ARC domain-containing disease resistance protein. | 0 |
| RefSeq | XP_015059824.1 | LOW QUALITY PROTEIN: disease resistance protein At4g27190-like [Solanum pennellii] | 0 |
| Q9T048 | Disease resistance protein At4g27190 OS=Arabidopsis thaliana OX=3702 GN=At4g27190 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology