Basic Information
Locus ID:
gene-LOC107005345
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 2768227 | 2774495 | - | gene-LOC107005345 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.75 | 43,839.99 Da | 38.52 | 75.69 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 133 | 207 | 3.92376E-50 | - |
| CDD | cd12352 | RRM1_TIA1_like | 49 | 119 | 1.73314E-36 | - |
| CDD | cd12354 | RRM3_TIA1_like | 253 | 327 | 1.17687E-30 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 49 | 115 | 1.4E-14 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 134 | 204 | 2.6E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 255 | 321 | 1.5E-11 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 36 | 123 | 2.55E-23 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 244 | 337 | 8.82E-22 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 126 | 212 | 6.31E-26 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 41 | 124 | 9.2E-21 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 230 | 332 | 9.3E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 125 | 224 | 1.8E-25 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 133 | 206 | 1.4E-22 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 48 | 117 | 2.4E-18 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 254 | 323 | 1.1E-17 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 48 | 117 | 7.5 | IPR003954 |
| SMART | SM00361 | rrm2_1 | 133 | 206 | 0.015 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 47 | 121 | 15.613252 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 132 | 210 | 17.233515 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 253 | 327 | 15.476809 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 248 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 248 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_015059398.1 | oligouridylate-binding protein 1-like isoform X1 [Solanum pennellii] | 0 |
| Q9M427 | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology