Basic Information
Locus ID:
gene-LOC107005323
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 78090901 | 78094299 | + | gene-LOC107005323 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 40,087.08 Da | 46.96 | 92.20 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16474 | RING-H2_RNF111_like | 299 | 341 | 1.36554E-19 | - |
| Pfam | PF13639 | Ring finger domain | 299 | 341 | 1.7E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 293 | 345 | 4.86E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 285 | 347 | 3.1E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 300 | 340 | 2.0E-8 | IPR001841 |
| SMART | SM00744 | ringv_2 | 299 | 341 | 0.0074 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 300 | 341 | 13.108904 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G63170.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_015059374.1 | E3 ubiquitin-protein ligase At1g63170-like [Solanum pennellii] | 0 |
| Q8LDB8 | E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana OX=3702 GN=At1g63170 PE=2 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology