Basic Information
Locus ID:
gene-LOC107005321
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 5576166 | 5578876 | - | gene-LOC107005321 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 28,040.97 Da | 51.55 | 74.84 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 34 | 84 | 6.49417E-26 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 36 | 82 | 3.1E-9 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 31 | 95 | 7.9E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 13 | 120 | 7.3E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 36 | 82 | 9.4E-10 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 36 | 83 | 12.681067 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 51 | 60 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27470.1 | RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase. | 0 |
| RefSeq | XP_015059371.1 | E3 ubiquitin-protein ligase RMA3-like [Solanum pennellii] | 0 |
| Q8GUK7 | E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology