Basic Information
Locus ID:
gene-LOC107005019
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 2660834 | 2664264 | - | gene-LOC107005019 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 68,085.44 Da | 43.00 | 105.99 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 249 | 291 | 8.82985E-29 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 455 | 493 | 2.8E-7 | IPR000225 |
| Pfam | PF04564 | U-box domain | 245 | 315 | 1.8E-21 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 372 | 411 | 1.2E-9 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 245 | 320 | 6.82E-31 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 342 | 616 | 1.33E-51 | IPR016024 |
| Gene3D | G3DSA:1.20.930.20 | - | 6 | 118 | 3.7E-8 | IPR036537 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 243 | 318 | 6.2E-31 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 335 | 619 | 4.8E-59 | IPR011989 |
| SMART | SM00185 | arm_5 | 372 | 412 | 3.3E-5 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 248 | 311 | 1.4E-35 | IPR003613 |
| SMART | SM00185 | arm_5 | 413 | 453 | 0.095 | IPR000225 |
| SMART | SM00185 | arm_5 | 454 | 494 | 0.047 | IPR000225 |
| SMART | SM00185 | arm_5 | 495 | 535 | 61.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 536 | 576 | 32.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 244 | 318 | 44.707935 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 424 | 466 | 9.4674 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 383 | 425 | 14.087399 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 506 | 546 | 10.2724 | IPR000225 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_015058961.1 | U-box domain-containing protein 14 [Solanum pennellii] | 0 |
| Q8VZ40 | U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology