Basic Information
Locus ID:
gene-LOC107004850
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Domain with 2 conserved Trp (W) residues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 70013251 | 70021752 | + | gene-LOC107004850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.10 | 128,045.59 Da | 61.77 | 54.44 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00268 | DEADc | 497 | 691 | 3.10699E-99 | - |
| CDD | cd18787 | SF2_C_DEAD | 705 | 834 | 1.11212E-61 | - |
| CDD | cd00201 | WW | 23 | 52 | 0.00196 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 510 | 680 | 1.4E-49 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 717 | 825 | 1.3E-32 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 557 | 841 | 4.53E-76 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 14 | 53 | 5.99E-8 | IPR036020 |
| Gene3D | G3DSA:2.20.70.10 | - | 16 | 54 | 2.0E-5 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 695 | 867 | 5.0E-59 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 461 | 694 | 2.9E-89 | IPR027417 |
| SMART | SM00487 | ultradead3 | 505 | 708 | 5.4E-66 | IPR014001 |
| SMART | SM00456 | ww_5 | 21 | 54 | 8.6E-6 | IPR001202 |
| SMART | SM00490 | helicmild6 | 745 | 825 | 1.8E-35 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 517 | 691 | 31.496424 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 11.3096 | IPR001202 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 486 | 514 | 11.912243 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 720 | 864 | 25.317665 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 637 | 645 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1005 | 1035 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1139 | 1179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1053 | 1098 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 245 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 297 | 329 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 297 | 330 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 969 | 1112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 283 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 249 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_015058717.1 | DEAD-box ATP-dependent RNA helicase 46-like [Solanum pennellii] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology