Basic Information
Locus ID:
gene-LOC107004788
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 61990812 | 61998055 | + | gene-LOC107004788 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.62 | 92,201.96 Da | 60.62 | 63.67 | -0.99 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 758 | 796 | 1.13128E-16 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 756 | 801 | 6.1E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 744 | 809 | 4.3E-11 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 758 | 796 | 9.907503 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 76 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 615 | 636 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 76 | - | - |
| Coils | Coil | Coil | 684 | 704 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27950.1 | Ring/U-Box superfamily protein. | 0 |
| RefSeq | XP_015058623.1 | uncharacterized protein LOC107004788 [Solanum pennellii] | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology