Basic Information
Locus ID:
gene-LOC107004776
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
DEAD/DEAH box helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 29877787 | 29883841 | - | gene-LOC107004776 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 46,223.79 Da | 37.23 | 98.39 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 249 | 379 | 1.0219E-62 | - |
| CDD | cd18045 | DEADc_EIF4AIII_DDX48 | 38 | 238 | 8.87104E-118 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 262 | 370 | 4.0E-31 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 61 | 223 | 3.4E-41 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 104 | 392 | 1.43E-72 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 245 | 409 | 8.2E-60 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 26 | 244 | 8.5E-64 | IPR027417 |
| SMART | SM00490 | helicmild6 | 289 | 370 | 1.1E-33 | IPR001650 |
| SMART | SM00487 | ultradead3 | 55 | 252 | 3.4E-54 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 248 | 409 | 27.000702 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 67 | 237 | 26.743151 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 36 | 64 | 11.184644 | IPR014014 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19760.1 | eukaryotic initiation factor 4A-III. Encodes an RNA helicase that may be a component of the Exon Junction Complex. Subcellular localization is modulated by stress. Under normal conditions it is localized to the nuceloplasm but under hyopoxic conditions it localizes to the nucleolus and splicing speckles. | 0 |
| RefSeq | XP_004250657.1 | eukaryotic initiation factor 4A-3 [Solanum lycopersicum] | 0 |
| P41380 | Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology