halophFGD

Basic Information

Locus ID: gene-LOC107004739

Species & Taxonomic ID: Solanum pennellii & 28526

Genome Assembly: GCF_001406875.1

Description: CAF1 family ribonuclease

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr11	47102766	47106381	+	gene-LOC107004739

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.81	31,416.48 Da	30.08	92.48	-0.13

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF04857	CAF1 family ribonuclease	15	136	3.9E-11	IPR006941
SUPERFAMILY	SSF53098	Ribonuclease H-like	12	265	4.93E-88	IPR012337
Gene3D	G3DSA:3.30.420.10	-	2	268	5.0E-98	IPR036397

Gene Ontology

Molecular Function:

GO:0003676 (nucleic acid binding)

KEGG Pathway

KO Term:

K12581 (CCR4-NOT transcription complex subunit 7/8)

Pathway:

ko03018 (RNA degradation) map03018 (RNA degradation)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G32070.1	Polynucleotidyl transferase, ribonuclease H-like superfamily protein.
RefSeq	XP_015058556.1	probable CCR4-associated factor 1 homolog 7 [Solanum pennellii]
Swiss-Prot	Q9SKZ2	Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg13473, jg18303, jg4632, jg7965
Aizoaceae	Mesembryanthemum crystallinum	2	gene_13269, gene_21445
Amaranthaceae	Atriplex hortensis	2	Ah009210, Ah034825
Amaranthaceae	Beta vulgaris	2	BVRB_2g031260, BVRB_9g223140
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg11688, Sbi_jg21071, Sbi_jg22730
Amaranthaceae	Salicornia europaea	2	Seu_jg16605, Seu_jg20936
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00005086, GOSA_00018282
Amaranthaceae	Suaeda glauca	6	Sgl60622, Sgl62400, Sgl66949, Sgl70922, Sgl72218, Sgl74496
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000016566, gene:ENSEOMG00000017326 ... gene:ENSEOMG00000019234, gene:ENSEOMG00000037244, gene:ENSEOMG00000050925, gene:ENSEOMG00000052684
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1BG0021910, CQ.Regalona.r1.2AG0023710 ... CQ.Regalona.r1.7BG0000080, CQ.Regalona.r1.9AG0024340
Anacardiaceae	Pistacia vera	1	pistato.v30250800
Apiaceae	Apium graveolens	3	Ag3G01362, Ag7G01895, Ag9G01193
Arecaceae	Cocos nucifera	4	COCNU_01G005280, COCNU_08G003950, contig69218186G000010 ... scaffold015856G000020
Arecaceae	Phoenix dactylifera	3	gene-LOC103710413, gene-LOC103712200, gene-LOC103714228
Asparagaceae	Asparagus officinalis	2	AsparagusV1_05.3364.V1.1, AsparagusV1_05.3469.V1.1
Asteraceae	Flaveria trinervia	3	Ftri16G00648, Ftri18G24347, Ftri2G23221
Brassicaceae	Arabidopsis thaliana	4	AT1G15920.2, AT1G80780.3, AT2G32070.1, AT5G10960.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10014350m.g.v1.0, Thhalv10017059m.g.v1.0 ... Thhalv10018990m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp4g14480.v2.2, Sp5g34960.v2.2, Sp6g32530.v2.2
Brassicaceae	Brassica nigra	4	BniB02g051040.2N, BniB05g075340.2N, BniB06g068170.2N ... BniB08g004440.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq02G0400
Casuarinaceae	Casuarina glauca	2	Cgl02G0426, Cgl03G2676
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno01g06320, gene.Cymno02g05250
Dunaliellaceae	Dunaliella salina	1	Dusal.0690s00005.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate04g29420, gene.Thate05g06260, gene.Thate07g07720
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-315, nbisL1-mrna-3304, nbisL1-mrna-8152
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.806, evm.TU.LG07.1513, evm.TU.LG07.247
Plantaginaceae	Plantago ovata	2	Pov_00004795, Pov_00034471
Plumbaginaceae	Limonium bicolor	1	Lb2G12463
Poaceae	Echinochloa crus-galli	6	AH03.1926, AH07.3782, AH08.1683, BH08.1739, CH03.2263 ... CH08.1883
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0148960, gene-QOZ80_2BG0205250 ... gene-QOZ80_6AG0535240, gene-QOZ80_6BG0488480, gene-QOZ80_8AG0632220, gene-QOZ80_8BG0661210
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.5HG0484150.1.CDS1 ... HORVU.MOREX.r3.6HG0624290.1.CDS1, HORVU.MOREX.r3.7HG0696100.1
Poaceae	Lolium multiflorum	5	gene-QYE76_005114, gene-QYE76_005196, gene-QYE76_026003 ... gene-QYE76_026004, gene-QYE76_031366
Poaceae	Oryza coarctata	5	Oco03G024250, Oco15G009350, Oco16G008770, Oco17G004900 ... Oco18G004940
Poaceae	Oryza sativa	3	LOC_Os02g55300.1, LOC_Os08g34170.1, LOC_Os09g24990.2
Poaceae	Paspalum vaginatum	3	gene-BS78_02G183400, gene-BS78_04G306100 ... gene-BS78_07G149100
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0206282, Pt_Chr0702185
Poaceae	Sporobolus alterniflorus	8	Chr09G017700, Chr10G009960, Chr13G001880, Chr14G014010 ... Chr16G015070, Chr17G014530, Chr18G007640, Chr21G013070
Poaceae	Thinopyrum elongatum	3	Tel5E01G369500, Tel6E01G637400, Tel7E01G510200
Poaceae	Triticum dicoccoides	6	gene_TRIDC5AG036120, gene_TRIDC5BG038010 ... gene_TRIDC6AG053740, gene_TRIDC6BG062640, gene_TRIDC7AG041200, gene_TRIDC7BG032350
Poaceae	Triticum aestivum	3	TraesCS6A02G358700.1.cds1, TraesCS6B02G391400.1.cds1 ... TraesCS6D02G341500.1.cds1
Poaceae	Zea mays	5	Zm00001eb041180_P001, Zm00001eb179830_P001 ... Zm00001eb192370_P001, Zm00001eb257850_P001, Zm00001eb312820_P001
Poaceae	Zoysia japonica	4	nbis-gene-17057, nbis-gene-20044, nbis-gene-30820 ... nbis-gene-8428
Poaceae	Zoysia macrostachya	5	Zma_g14623, Zma_g17329, Zma_g24128, Zma_g30322, Zma_g32412
Portulacaceae	Portulaca oleracea	3	evm.TU.LG05.1545, evm.TU.LG07.1215, evm.TU.LG08.998
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g24120, gene.Posoc03g12630
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_11_RagTag.620, evm.TU.Scaffold_11_RagTag.622 ... evm.TU.Scaffold_18_RagTag.247
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-28335, nbisL1-mrna-6702
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-1686, nbisL1-mrna-20937, nbisL1-mrna-2575
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-12254, nbisL1-mrna-12255, nbisL1-mrna-7748 ... nbisL1-mrna-7749
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000005l.24, add.evm.TU.utg000005l.25 ... add.evm.TU.utg000022l.105, add.evm.TU.utg000023l.123, add.evm.TU.utg000023l.124
Rhizophoraceae	Kandelia obovata	3	Maker00008639, Maker00018718, Maker00018765
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-17130, nbisL1-mrna-17131, nbisL1-mrna-22427 ... nbisL1-mrna-22428
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-20688, nbisL1-mrna-21515, nbisL1-mrna-21517
Salicaceae	Populus euphratica	4	populus_peu04092, populus_peu12249, populus_peu12987 ... populus_peu34924
Solanaceae	Lycium barbarum	4	gene-LOC132598921, gene-LOC132606205, gene-LOC132633028 ... gene-LOC132633030
Solanaceae	Solanum chilense	3	SOLCI002190200, SOLCI003338800, SOLCI003774000
Solanaceae	Solanum pennellii	3	gene-LOC107004739, gene-LOC107012132, gene-LOC107023281
Tamaricaceae	Reaumuria soongarica	2	STRG.12375_chr02_-, STRG.1238_chr01_+
Tamaricaceae	Tamarix chinensis	3	TC01G0995, TC10G1047, TC10G2405
Zosteraceae	Zostera marina	2	Zosma03g06320.v3.1, Zosma06g16020.v3.1