Basic Information
Locus ID:
gene-LOC107004680
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 64941376 | 64963540 | + | gene-LOC107004680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 130,869.40 Da | 43.03 | 78.75 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 53 | 176 | 6.25505E-41 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 194 | 523 | 7.02354E-160 | - |
| Pfam | PF00917 | MATH domain | 58 | 178 | 4.6E-19 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 196 | 518 | 1.2E-45 | IPR001394 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 622 | 874 | 1.6E-74 | IPR024729 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 884 | 1094 | 5.0E-58 | IPR029346 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 191 | 550 | 1.45E-96 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 49 | 185 | 6.21E-43 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 193 | 522 | 1.6E-88 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 49 | 192 | 1.1E-53 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 800 | 897 | 2.1E-26 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 682 | 799 | 4.9E-42 | - |
| SMART | SM00061 | math_3 | 53 | 157 | 2.8E-21 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 51 | 176 | 38.826553 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 196 | 521 | 40.403683 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 436 | 453 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 197 | 212 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 50 | - | - |
| Coils | Coil | Coil | 530 | 564 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.2 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_015058468.1 | ubiquitin carboxyl-terminal hydrolase 13-like isoform X1 [Solanum pennellii] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology