Basic Information
Locus ID:
gene-LOC107004678
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 61936572 | 61945435 | - | gene-LOC107004678 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.05 | 118,527.55 Da | 41.51 | 77.11 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 721 | 761 | 1.65179E-20 | - |
| Pfam | PF16135 | Tify domain binding domain | 490 | 545 | 2.2E-15 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 655 | 705 | 1.6E-15 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 703 | 763 | 6.58E-16 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 964 | 1065 | 7.62E-6 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 801 | 863 | 5.09E-8 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 706 | 793 | 1.4E-18 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 805 | 868 | 3.3E-11 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 907 | 1076 | 5.5E-7 | - |
| SMART | SM00249 | PHD_3 | 721 | 762 | 3.7E-9 | IPR001965 |
| SMART | SM00249 | PHD_3 | 809 | 866 | 1.4E-5 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 807 | 868 | 8.7513 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 719 | 764 | 10.317699 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 722 | 761 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 286 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 579 | 616 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 579 | 620 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 266 | 280 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 59 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27980.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_015058462.1 | uncharacterized protein LOC107004678 isoform X1 [Solanum pennellii] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology