Basic Information
Locus ID:
gene-LOC107004635
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 2843880 | 2854693 | - | gene-LOC107004635 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 66,968.83 Da | 54.55 | 60.10 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 140 | 190 | 1.94136E-15 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 288 | 336 | 7.9E-10 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 209 | 271 | 1.0E-14 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 290 | 338 | 1.77E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 134 | 218 | 2.0E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 210 | 278 | 1.64E-12 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 564 | 591 | 7.85E-6 | IPR036443 |
| Gene3D | G3DSA:1.20.120.1750 | - | 267 | 522 | 1.9E-85 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 134 | 223 | 2.8E-17 | IPR013083 |
| Gene3D | G3DSA:2.30.30.380 | - | 563 | 591 | 1.8E-5 | - |
| SMART | SM00647 | ibrneu5 | 209 | 271 | 6.1E-23 | IPR002867 |
| SMART | SM00547 | zf_4 | 566 | 590 | 1.6E-5 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 284 | 345 | 0.041 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 136 | 349 | 50.557915 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 140 | 184 | 9.110841 | IPR001841 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 564 | 591 | 8.885472 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 568 | 587 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 538 | 560 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_015058402.1 | probable E3 ubiquitin-protein ligase ARI8 [Solanum pennellii] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology