HalophFGD

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Basic Information
Locus ID: gene-LOC107004481
Species & Taxonomic ID: Solanum pennellii & 28526
Genome Assembly: GCF_001406875.1
Description: SecA preprotein cross-linking domain
Maps and Mapping Data
Chromosome Start End Strand ID
chr11 39582 62303 - gene-LOC107004481
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.56 207,412.98 Da 40.17 93.33 -0.16
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd17928 DEXDc_SecA 894 1250 2.3153E-124 -
CDD cd16587 RING-HC_TRIM32_C-VII 13 59 4.31894E-17 -
CDD cd18803 SF2_C_secA 1256 1527 1.1085E-62 IPR044722
Pfam PF13445 RING-type zinc-finger 14 56 7.0E-6 IPR027370
Pfam PF07517 SecA DEAD-like domain 864 1237 5.1E-120 IPR011115
Pfam PF07516 SecA Wing and Scaffold domain 1557 1832 8.1E-45 IPR011116
Pfam PF00400 WD domain, G-beta repeat 600 636 0.22 IPR001680
Pfam PF01043 SecA preprotein cross-linking domain 1090 1194 7.0E-26 IPR011130
Pfam PF00400 WD domain, G-beta repeat 694 724 0.0091 IPR001680
SUPERFAMILY SSF81767 Pre-protein crosslinking domain of SecA 1082 1203 1.83E-36 IPR036670
SUPERFAMILY SSF81886 Helical scaffold and wing domains of SecA 1565 1842 1.57E-38 IPR036266
SUPERFAMILY SSF57850 RING/U-box 11 68 5.01E-9 -
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1253 1540 7.03E-41 IPR027417
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 859 1251 1.34E-73 IPR027417
SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 204 482 1.97E-13 IPR011009
SUPERFAMILY SSF50978 WD40 repeat-like 563 849 1.83E-45 IPR036322
Gene3D G3DSA:2.130.10.10 - 525 643 2.6E-15 IPR015943
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger) 3 82 2.1E-14 IPR013083
Gene3D G3DSA:1.10.3060.10 Helical scaffold and wing domains of SecA 1704 1832 2.4E-18 -
Gene3D G3DSA:2.130.10.10 - 644 867 5.3E-31 IPR015943
Gene3D G3DSA:3.40.50.300 - 1253 1559 6.3E-78 IPR027417
Gene3D G3DSA:3.90.1440.10 - 1084 1204 1.4E-167 -
Gene3D G3DSA:1.10.3060.10 Helical scaffold and wing domains of SecA 1563 1686 2.2E-14 -
Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 201 481 1.1E-10 -
Gene3D G3DSA:3.40.50.300 - 874 1251 1.4E-167 IPR027417
SMART SM00184 ring_2 14 58 2.5E-6 IPR001841
SMART SM00957 SecA_DEAD_2 858 1238 5.0E-234 IPR011115
SMART SM00220 serkin_6 167 479 0.0017 IPR000719
SMART SM00320 WD40_4 728 769 47.0 IPR001680
SMART SM00320 WD40_4 688 725 2.8E-5 IPR001680
SMART SM00320 WD40_4 557 594 0.35 IPR001680
SMART SM00320 WD40_4 597 637 8.4E-6 IPR001680
SMART SM00958 SecA_PP_bind_2 1083 1194 3.5E-41 IPR011130
SMART SM00320 WD40_4 770 807 120.0 IPR001680
SMART SM00320 WD40_4 643 685 0.0014 IPR001680
TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 880 1657 7.7E-264 IPR000185
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 941 1082 15.124035 IPR014001
ProSiteProfiles PS50011 Protein kinase domain profile. 131 479 13.234385 IPR000719
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 564 603 9.706414 IPR001680
ProSiteProfiles PS51196 SecA family profile. 855 1559 132.809433 IPR014018
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 695 724 9.388329 -
ProSiteProfiles PS50089 Zinc finger RING-type profile. 14 59 11.648357 IPR001841
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 695 734 11.477578 IPR001680
ProSitePatterns PS01312 SecA family signature. 1338 1353 - IPR020937
PRINTS PR00906 SecA protein signature 953 967 3.9E-60 IPR000185
PRINTS PR00906 SecA protein signature 1175 1197 3.9E-60 IPR000185
PRINTS PR00906 SecA protein signature 969 979 3.9E-60 IPR000185
PRINTS PR00906 SecA protein signature 1022 1042 3.9E-60 IPR000185
PRINTS PR00906 SecA protein signature 1212 1229 3.9E-60 IPR000185
PRINTS PR00906 SecA protein signature 915 939 3.9E-60 IPR000185
PRINTS PR00906 SecA protein signature 1249 1262 3.9E-60 IPR000185
Hamap MF_01382 Protein translocase subunit SecA [secA]. 855 1835 17.676773 IPR000185
Gene Ontology
Biological Process:
GO:0006468 (protein phosphorylation) GO:0006605 (protein targeting) GO:0006886 (intracellular protein transport) GO:0017038 (protein import)
Molecular Function:
GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)
Cellular Component:
GO:0016020 (membrane)
KEGG Pathway
KO Term:
K03070 (preprotein translocase subunit SecA [EC:7.4.2.8])
Pathway:
ko02024 (Quorum sensing) map02024 (Quorum sensing) ko03060 (Protein export) map03060 (Protein export) ko03070 (Bacterial secretion system) map03070 (Bacterial secretion system)
Best hit
Source Best Hit ID Description E-value
TAIR AT1G21650.3 Preprotein translocase SecA family protein. Encodes a component of the thylakoid-localized Sec system involved in the translocation of cytoplasmic proteins into plastid. Loss-of-function mutations result in arrest at the globular stage and embryo lethality. 0
RefSeq XP_015058172.1 protein translocase subunit SECA2, chloroplastic isoform X2 [Solanum pennellii] 0
Swiss-Prot D8WUA4 Protein translocase subunit SECA2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SECA2 PE=1 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 2 jg10458, jg9019
Aizoaceae Mesembryanthemum crystallinum 2 gene_1077, gene_13408
Amaranthaceae Atriplex hortensis 2 Ah024121, Ah031607
Amaranthaceae Beta vulgaris 2 BVRB_1g010050, BVRB_5g122730
Amaranthaceae Salicornia bigelovii 5 Sbi_jg2775, Sbi_jg28369, Sbi_jg31191, Sbi_jg58082 ...
Sbi_jg58084
Amaranthaceae Salicornia europaea 2 Seu_jg25704, Seu_jg7111
Amaranthaceae Suaeda aralocaspica 2 GOSA_00004576, GOSA_00020180
Amaranthaceae Suaeda glauca 4 Sgl11665, Sgl17164, Sgl54639, Sgl59975
Amaranthaceae Chenopodium album 6 gene:ENSEOMG00000011856, gene:ENSEOMG00000013510 ...
gene:ENSEOMG00000031530, gene:ENSEOMG00000034341, gene:ENSEOMG00000044225, gene:ENSEOMG00000046942
Amaranthaceae Chenopodium quinoa 4 CQ.Regalona.r1.1AG0012840, CQ.Regalona.r1.1BG0013100 ...
CQ.Regalona.r1.8AG0010550, CQ.Regalona.r1.8BG0011700
Anacardiaceae Pistacia vera 2 pistato.v30007280, pistato.v30039110
Apiaceae Apium graveolens 3 Ag11G03939, Ag6G02443, Ag9G02368
Arecaceae Cocos nucifera 2 COCNU_01G000270, COCNU_15G003170
Arecaceae Phoenix dactylifera 2 gene-LOC103701417, gene-LOC103720122
Asparagaceae Asparagus officinalis 2 AsparagusV1_02.2259.V1.1, AsparagusV1_07.3638.V1.1
Asteraceae Flaveria trinervia 2 Ftri10G32559, Ftri18G11286
Brassicaceae Arabidopsis thaliana 2 AT1G21650.3, AT4G01800.2
Brassicaceae Eutrema salsugineum 2 Thhalv10006535m.g.v1.0, Thhalv10028392m.g.v1.0
Brassicaceae Schrenkiella parvula 2 Sp1g19170.v2.2, Sp6g01650.v2.2
Brassicaceae Brassica nigra 2 BniB03g009290.2N, BniB08g040660.2N
Casuarinaceae Casuarina equisetifolia 2 Ceq03G1867, Ceq06G0547
Casuarinaceae Casuarina glauca 2 Cgl03G2007, Cgl06G0567
Cymodoceaceae Cymodocea nodosa 2 gene.Cymno05g06910, gene.Cymno08g07140
Dunaliellaceae Dunaliella salina 2 Dusal.0027s00037.v1.0, Dusal.0035s00032.v1.0
Hydrocharitaceae Thalassia testudinum 2 gene.Thate01g16040, gene.Thate05g12950
Nitrariaceae Nitraria sibirica 2 evm.TU.LG04.547, evm.TU.LG06.839
Plantaginaceae Plantago ovata 2 Pov_00016539, Pov_00021694
Plumbaginaceae Limonium bicolor 2 Lb4G22942, Lb6G30841
Poaceae Echinochloa crus-galli 5 AH02.1497, BH02.1573, BH04.644, CH02.1719, CH04.655
Poaceae Eleusine coracana subsp. coracana 4 gene-QOZ80_1AG0015110, gene-QOZ80_1BG0063980 ...
gene-QOZ80_9AG0670100, gene-QOZ80_9BG0693570
Poaceae Hordeum vulgare 2 HORVU.MOREX.r3.3HG0259100.1, HORVU.MOREX.r3.4HG0347020.1
Poaceae Lolium multiflorum 3 gene-QYE76_052738, gene-QYE76_059523, gene-QYE76_064524
Poaceae Oryza coarctata 3 Oco01G009280, Oco02G009570, Oco22G003520
Poaceae Oryza sativa 2 LOC_Os01g21820.1, LOC_Os11g08980.1
Poaceae Paspalum vaginatum 2 gene-BS78_03G139800, gene-BS78_05G097000
Poaceae Puccinellia tenuiflora 2 Pt_Chr0103927, Pt_Chr0603665
Poaceae Sporobolus alterniflorus 6 Chr02G022280, Chr05G013160, Chr05G013200, Chr05G013210 ...
Chr16G010730, Chr17G009810
Poaceae Thinopyrum elongatum 2 Tel3E01G338700, Tel4E01G158600
Poaceae Triticum dicoccoides 4 gene_TRIDC3AG028190, gene_TRIDC3BG032070 ...
gene_TRIDC4AG034290, gene_TRIDC4BG015530
Poaceae Triticum aestivum 6 TraesCS3A02G198400.1, TraesCS3B02G222700.1 ...
TraesCS3D02G196700.2, TraesCS4A02G216200.1, TraesCS4B02G100000.1, TraesCS4D02G096200.1
Poaceae Zea mays 2 Zm00001eb090990_P001, Zm00001eb130760_P002
Poaceae Zoysia japonica 2 nbis-gene-27238, nbis-gene-6517
Poaceae Zoysia macrostachya 2 Zma_g10242, Zma_g18533
Portulacaceae Portulaca oleracea 3 evm.TU.LG04.1549, evm.TU.LG10.1366, evm.TU.LG11.1721
Posidoniaceae Posidonia oceanica 2 gene.Posoc01g13940, gene.Posoc05g18660
Rhizophoraceae Bruguiera sexangula 2 evm.TU.Scaffold_5_RagTag.729, evm.TU.Scaffold_7_RagTag.1138
Rhizophoraceae Carallia pectinifolia 2 nbisL1-mrna-10616, nbisL1-mrna-18708
Rhizophoraceae Ceriops tagal 2 nbisL1-mrna-103, nbisL1-mrna-5559
Rhizophoraceae Ceriops zippeliana 2 nbisL1-mrna-11369, nbisL1-mrna-13125
Rhizophoraceae Kandelia candel 2 evm.TU.utg000002l.412, evm.TU.utg000006l.609
Rhizophoraceae Kandelia obovata 2 Maker00011737, Maker00013085
Rhizophoraceae Rhizophora apiculata 2 nbisL1-mrna-10163, nbisL1-mrna-8110
Rhizophoraceae Rhizophora mangle 2 nbisL1-mrna-7364, nbisL1-mrna-9803
Salicaceae Populus euphratica 2 populus_peu27429, populus_peu32459
Solanaceae Lycium barbarum 2 gene-LOC132627149, gene-LOC132644885
Solanaceae Solanum chilense 2 SOLCI001197400, SOLCI003112400
Solanaceae Solanum pennellii 2 gene-LOC107002391, gene-LOC107004481
Tamaricaceae Reaumuria soongarica 2 gene_17557, gene_866
Tamaricaceae Tamarix chinensis 2 TC03G2545, TC07G1717
Zosteraceae Zostera marina 4 Zosma03g36860.v3.1, Zosma03g36910.v3.1, Zosma06g28380.v3.1 ...
Zosma07g00120.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.