Basic Information
Locus ID:
gene-LOC107004473
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Topless-related protein 3-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 100645818 | 100656933 | + | gene-LOC107004473 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.68 | 127,215.61 Da | 43.38 | 86.16 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 475 | 508 | 0.0045 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 936 | 969 | 0.0013 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 854 | 1117 | 3.05E-37 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 343 | 682 | 1.28E-38 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 761 | 983 | 3.8E-25 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 984 | 1123 | 2.2E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 446 | 693 | 1.1E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 328 | 430 | 2.5E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 393 | 436 | 99.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 643 | 684 | 210.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 887 | 927 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 930 | 969 | 8.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 467 | 508 | 5.7E-4 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 1.6E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 337 | 376 | 0.0015 | IPR001680 |
| SMART | SM00320 | WD40_4 | 510 | 551 | 0.036 | IPR001680 |
| SMART | SM00320 | WD40_4 | 554 | 597 | 200.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 2.8E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 848 | 884 | 340.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1075 | 1116 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 600 | 640 | 0.78 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1019 | 1061 | 15.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 474 | 509 | 9.572741 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.62804 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 343 | 385 | 9.739832 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 937 | 972 | 10.653776 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 937 | 978 | 13.11507 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 618 | 649 | 8.67045 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.021325 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 495 | 509 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.2 | TOPLESS-related 3. | 0 |
| RefSeq | XP_015058158.1 | topless-related protein 3 isoform X1 [Solanum pennellii] | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology