Basic Information
Locus ID:
gene-LOC107004140
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Short Name:
CMPG1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 897380 | 899023 | - | gene-LOC107004140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.27 | 48,996.12 Da | 37.82 | 100.12 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 26 | 68 | 2.90754E-22 | - |
| Pfam | PF04564 | U-box domain | 22 | 93 | 1.7E-21 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 19 | 97 | 4.71E-30 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 132 | 408 | 2.74E-12 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 5 | 99 | 7.8E-31 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 115 | 409 | 5.4E-10 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 25 | 88 | 1.1E-29 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 21 | 95 | 40.550453 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_015057864.1 | U-box domain-containing protein 21-like [Solanum pennellii] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology