Basic Information
Locus ID:
gene-LOC107003768
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Domain of unknown function DUF223
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 25042770 | 25052455 | + | gene-LOC107003768 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.17 | 50,734.95 Da | 39.12 | 91.41 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04480 | RPA1_DBD_A_like | 1 | 79 | 7.95465E-19 | - |
| CDD | cd04476 | RPA1_DBD_C | 175 | 337 | 4.81025E-25 | IPR013955 |
| Pfam | PF02721 | Domain of unknown function DUF223 | 18 | 92 | 3.7E-10 | IPR003871 |
| Pfam | PF08646 | Replication factor-A C terminal domain | 193 | 306 | 2.8E-14 | IPR013955 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 169 | 336 | 7.71E-22 | IPR012340 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 7 | 86 | 8.0E-10 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 159 | 334 | 1.4E-30 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 1 | 83 | 5.0E-13 | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_015057538.1 | uncharacterized protein LOC107003768 [Solanum pennellii] | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology