Basic Information
Locus ID:
gene-LOC107003505
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
E3 ubiquitin-protein ligase PUB23-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 63244475 | 63245977 | + | gene-LOC107003505 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 46,000.20 Da | 50.62 | 106.31 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 10 | 53 | 4.32938E-23 | - |
| Pfam | PF04564 | U-box domain | 6 | 77 | 6.1E-21 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 101 | 392 | 3.38E-16 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 3 | 78 | 1.84E-28 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 87 | 397 | 2.8E-18 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 86 | 6.6E-30 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 9 | 73 | 1.2E-30 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 5 | 80 | 39.26783 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_015057334.1 | E3 ubiquitin-protein ligase PUB23-like [Solanum pennellii] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology