Basic Information
Locus ID:
gene-LOC107003271
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 179531 | 181163 | + | gene-LOC107003271 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 40,735.69 Da | 41.72 | 70.83 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 230 | 266 | 0.014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 271 | 310 | 0.093 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 143 | 175 | 0.029 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 42 | 359 | 2.0E-50 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 17 | 359 | 1.9E-82 | IPR015943 |
| SMART | SM00320 | WD40_4 | 321 | 359 | 5.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 181 | 224 | 0.12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 90 | 131 | 340.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 269 | 310 | 0.084 | IPR001680 |
| SMART | SM00320 | WD40_4 | 228 | 266 | 2.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 26 | 69 | 6.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 134 | 175 | 0.061 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 235 | 275 | 11.811761 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 235 | 266 | 8.729241 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G23730.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_015057061.1 | WD repeat-containing protein RUP2-like [Solanum pennellii] | 0 |
| Q9FFA7 | WD repeat-containing protein RUP2 OS=Arabidopsis thaliana OX=3702 GN=RUP2 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg10176, jg14000, jg14005, jg2310 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30182610 |
| Apiaceae | Apium graveolens | 1 | Ag2G01995 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G007510 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719425 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.2171.V1.1, AsparagusV1_07.2172.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G00460 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G23730.1, AT5G52250.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10005519m.g.v1.0, Thhalv10015606m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g23490.v2.2, Sp6g14500.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB07g040570.2N, BniB08g017340.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2114 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2185 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g05810 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g06580 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2713 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00030293 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.110, BH07.103, CH03.4720 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2AG0099170 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0545090.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_019532 |
| Poaceae | Oryza coarctata | 2 | Oco03G000680, Oco04G000630 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g02380.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G010700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0700684 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G101500 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6AG004660 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G039200.1.cds1, TraesCS6B02G054100.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb229880_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-52335 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14830 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc02g14340, gene.Posoc02g16250, gene.Posoc06g04980 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.129 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29212 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7240 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2152 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000008l.26 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001439 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17644 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6273 |
| Salicaceae | Populus euphratica | 2 | populus_peu29272, populus_peu30631 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613860 |
| Solanaceae | Solanum chilense | 1 | SOLCI001590200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003271 |