Basic Information
Locus ID:
gene-LOC107003136
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 61283636 | 61294289 | - | gene-LOC107003136 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.80 | 95,398.69 Da | 53.47 | 89.98 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 58 | 207 | 3.44697E-27 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 786 | 827 | 5.1789E-23 | - |
| Pfam | PF04564 | U-box domain | 782 | 850 | 4.0E-17 | IPR003613 |
| Pfam | PF00069 | Protein kinase domain | 512 | 765 | 7.8E-35 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 491 | 764 | 7.01E-59 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 775 | 849 | 4.68E-23 | - |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 73 | 174 | 1.76E-6 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 59 | 176 | 1.7E-5 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 493 | 580 | 4.5E-22 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 582 | 783 | 3.4E-40 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 784 | 851 | 1.2E-26 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 785 | 848 | 2.9E-25 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 781 | 852 | 33.447357 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 508 | 786 | 31.198698 | IPR000719 |
| ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 626 | 638 | - | IPR008266 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 514 | 535 | - | IPR017441 |
| Coils | Coil | Coil | 383 | 403 | - | - |
| Coils | Coil | Coil | 327 | 347 | - | - |
| Coils | Coil | Coil | 355 | 375 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_015056889.1 | U-box domain-containing protein 33-like [Solanum pennellii] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg8343 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5897 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028043 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g173960 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1771, Sbi_jg34761 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2966 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003189 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73014, Sgl76555 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005998, gene:ENSEOMG00000037084 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0002760, CQ.Regalona.r1.9BG0002910 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30060120 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G015300 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103703486 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G07742 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G2185 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G2344 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g19320 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g00360, gene.Thate07g13830 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.1282 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002356 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G06851 |
| Poaceae | Echinochloa crus-galli | 1 | CH09.1232 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0636500, gene-QOZ80_8BG0665160 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0107400.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_038480 |
| Poaceae | Oryza coarctata | 2 | Oco19G000020, Oco20G000020 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g01060.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G243300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0305210, Pt_Chr0305250 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr20G000540, Chr29G002590, Chr29G002600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG008760, gene_TRIDC2BG010580 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G079300.1, TraesCS2B02G094100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb082370_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-42544 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23218 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1862, evm.TU.LG14.17 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g01350 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.819 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-30196 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19659 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16208 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.489 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015439 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4407 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20956 |
| Salicaceae | Populus euphratica | 3 | populus_peu02133, populus_peu02253, populus_peu35663 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132643562 |
| Solanaceae | Solanum chilense | 1 | SOLCI004543800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003136 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2626 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0082 |
| Zosteraceae | Zostera marina | 1 | Zosma01g38570.v3.1 |