Basic Information
Locus ID:
gene-LOC107002892
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 61417913 | 61426020 | + | gene-LOC107002892 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.58 | 72,457.17 Da | 42.81 | 95.53 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 261 | 303 | 3.68631E-28 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 467 | 505 | 3.5E-8 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 384 | 423 | 5.1E-11 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 549 | 588 | 1.0E-5 | IPR000225 |
| Pfam | PF04564 | U-box domain | 257 | 327 | 1.6E-22 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 352 | 628 | 1.38E-51 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 251 | 333 | 3.79E-32 | - |
| Gene3D | G3DSA:1.20.930.20 | - | 8 | 117 | 4.0E-11 | IPR036537 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 257 | 330 | 3.2E-32 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 341 | 660 | 5.8E-59 | IPR011989 |
| SMART | SM00185 | arm_5 | 590 | 630 | 310.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 507 | 547 | 23.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 260 | 323 | 9.2E-36 | IPR003613 |
| SMART | SM00185 | arm_5 | 384 | 424 | 2.7E-7 | IPR000225 |
| SMART | SM00185 | arm_5 | 425 | 465 | 0.1 | IPR000225 |
| SMART | SM00185 | arm_5 | 548 | 588 | 8.6 | IPR000225 |
| SMART | SM00185 | arm_5 | 466 | 506 | 0.041 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 518 | 560 | 9.502399 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 256 | 330 | 46.379772 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 395 | 437 | 12.9324 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 630 | 663 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 250 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 253 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_015056578.1 | U-box domain-containing protein 13-like [Solanum pennellii] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology