Basic Information
Locus ID:
gene-LOC107002771
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 77620742 | 77626729 | - | gene-LOC107002771 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 42,969.95 Da | 42.20 | 100.99 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 62 | 326 | 3.3E-86 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 65 | 325 | 6.1E-41 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 89 | 389 | 1.6E-91 | IPR027417 |
| SMART | SM00382 | AAA_5 | 112 | 293 | 4.5E-4 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 58 | 381 | 1.9E-98 | IPR013765 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 255 | 331 | 17.536768 | IPR020587 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 90 | 249 | 28.116976 | IPR020588 |
| PRINTS | PR00142 | RecA protein signature | 182 | 211 | 4.3E-59 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 269 | 297 | 4.3E-59 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 148 | 177 | 4.3E-59 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 220 | 249 | 4.3E-59 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 355 | 372 | 4.3E-59 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 302 | 331 | 4.3E-59 | IPR013765 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10140.1 | RECA homolog 3. | 0 |
| RefSeq | XP_027768299.1 | DNA repair protein recA homolog 2, mitochondrial [Solanum pennellii] | 0 |
| Q8RY99 | DNA repair protein recA homolog 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g10140 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology