Basic Information
Locus ID:
gene-LOC107002761
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
PPR repeat family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 96510247 | 96511899 | + | gene-LOC107002761 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 60,721.75 Da | 30.39 | 96.25 | 0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 364 | 394 | 2.3E-9 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 336 | 356 | 1.3 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 436 | 461 | 5.8E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 27 | 54 | 0.0056 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 260 | 307 | 1.1E-8 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 160 | 207 | 9.3E-10 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 322 | 544 | 6.0E-36 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 15 | 108 | 6.0E-12 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 109 | 214 | 6.9E-18 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 221 | 321 | 9.1E-21 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 27 | 55 | 3.6E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 263 | 297 | 1.1E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 437 | 460 | 0.0017 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 364 | 398 | 5.6E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 162 | 195 | 3.9E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 362 | 396 | 12.638436 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 160 | 194 | 10.731171 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 261 | 295 | 12.145178 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46050.1 | Pentatricopeptide repeat (PPR-like) superfamily protein. | 0 |
| RefSeq | XP_015056445.2 | pentatricopeptide repeat-containing protein At2g46050, mitochondrial [Solanum pennellii] | 0 |
| O82363 | Pentatricopeptide repeat-containing protein At2g46050, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E39 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g004360 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4535, Sbi_jg49433 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5944 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000469 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11046, Sgl16455 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000035500 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0003120, CQ.Regalona.r1.2BG0025130 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30004720 |
| Apiaceae | Apium graveolens | 2 | Ag6G01577, Ag6G01578 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G009980 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715482 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1408.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G24567 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G46050.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001720m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g28110.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g004400.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0957 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0987 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.844 |
| Poaceae | Echinochloa crus-galli | 1 | CH05.524 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0384580, gene-QOZ80_5BG0431340 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0074200.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_014417, gene-QYE76_014418 |
| Poaceae | Oryza coarctata | 1 | Oco13G004730 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g15570.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G056700 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr19G013240, Chr27G002650 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G454900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG041570, gene_TRIDC1BG047480 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G279400.1.cds1, TraesCS1B02G288500.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb264840_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24861 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2250, evm.TU.LG06.55 |
| Salicaceae | Populus euphratica | 1 | populus_peu27670 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645556 |
| Solanaceae | Solanum chilense | 1 | SOLCI001074300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002761 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15222 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G2243 |