Basic Information
Locus ID:
gene-LOC107002562
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 80477704 | 80488414 | + | gene-LOC107002562 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.22 | 100,308.26 Da | 41.56 | 77.96 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 531 | 571 | 4.69093E-17 | - |
| Pfam | PF16135 | Tify domain binding domain | 465 | 513 | 7.7E-16 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 191 | 246 | 4.2E-14 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 532 | 573 | 4.7E-8 | IPR019787 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 773 | 863 | 1.56E-6 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 613 | 676 | 2.02E-9 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 523 | 576 | 2.67E-15 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 616 | 679 | 1.7E-13 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 518 | 597 | 1.8E-18 | IPR013083 |
| SMART | SM00249 | PHD_3 | 620 | 677 | 1.1E-4 | IPR001965 |
| SMART | SM00249 | PHD_3 | 531 | 572 | 7.8E-11 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 529 | 574 | 10.371099 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 532 | 571 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 370 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 44 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36720.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_015056110.1 | uncharacterized protein LOC107002562 [Solanum pennellii] | 0 |
| Q6PDQ2 | Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology