Basic Information
Locus ID:
gene-LOC107002516
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Short Name:
RAPTOR1
Description:
Regulatory-associated protein of TOR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 75773091 | 75778391 | + | gene-LOC107002516 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.42 | 15,566.02 Da | 32.77 | 102.99 | 0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 107 | 136 | 0.044 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 56 | 89 | 0.17 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 6 | 136 | 1.01E-14 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 6 | 141 | 7.9E-14 | IPR015943 |
| SMART | SM00320 | WD40_4 | 50 | 89 | 0.34 | IPR001680 |
| SMART | SM00320 | WD40_4 | 97 | 137 | 2.2 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
ko04136 (Autophagy - other)
map04136 (Autophagy - other)
ko04138 (Autophagy - yeast)
map04138 (Autophagy - yeast)
ko04140 (Autophagy - animal)
map04140 (Autophagy - animal)
ko04150 (mTOR signaling pathway)
map04150 (mTOR signaling pathway)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04211 (Longevity regulating pathway)
map04211 (Longevity regulating pathway)
ko04213 (Longevity regulating pathway - multiple species)
map04213 (Longevity regulating pathway - multiple species)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G08850.1 | HEAT repeat ;WD domain, G-beta repeat protein protein. Encodes one of two Arabidopsis RAPTOR/KOG1 homologs. RAPTOR proteins are binding partners of the target of rapamycin kinase that is present in all eukaryotes and play a central role in the stimulation of cell growth and metabolism in response to nutrients. Mutants show embryo lethal phenotype which occurs at pre-globular stage. May interact with TOR kinase in a rapamycin like signaling pathway. Interacts with TOR and S6K1 in vivo. Overexpression of RAPTOR1 rendered the S6K1 osmotic stress insensitive. | 0 |
| RefSeq | XP_027768182.1 | regulatory-associated protein of TOR 1-like [Solanum pennellii] | 0 |
| Q93YQ1 | Regulatory-associated protein of TOR 1 OS=Arabidopsis thaliana OX=3702 GN=RAPTOR1 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g157960 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004897, gene:ENSEOMG00000008315 ... |
| Apiaceae | Apium graveolens | 1 | Ag10G01636 |
| Arecaceae | Cocos nucifera | 1 | contig69263270G000010 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G008240, Chr16G008280 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002516 |