Basic Information
Locus ID:
gene-LOC107002485
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Ring finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 1602982 | 1612891 | + | gene-LOC107002485 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 57,401.02 Da | 47.63 | 64.68 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 467 | 508 | 1.4E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 466 | 511 | 4.12E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 426 | 512 | 1.3E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 467 | 507 | 9.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 467 | 508 | 12.267982 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53190.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_027768198.1 | probable E3 ubiquitin-protein ligase ZFP1 [Solanum pennellii] | 0 |
| Q5QLR5 | Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza sativa subsp. japonica OX=39947 GN=ZFP1 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg19104, jg21369, jg38258 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah007902 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g086250 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg19228, Sbi_jg19357, Sbi_jg19358, Sbi_jg19364 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg18001, Seu_jg18004, Seu_jg5482 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00006780, GOSA_00024658 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl23271, Sgl28342, Sgl60947 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000009139, gene:ENSEOMG00000029784 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.4AG0018750, CQ.Regalona.r1.4BG0019230 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30161940 |
| Apiaceae | Apium graveolens | 2 | Ag2G01736, Ag3G00411 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G006370, scaffold000110G000020 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103697413, gene-LOC103703384, gene-LOC103713214 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.288.V1.1, AsparagusV1_05.2870.V1.1 |
| Asteraceae | Flaveria trinervia | 6 | Ftri14G13273, Ftri3G01693, Ftri4G05974, Ftri8G26665 ... |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G53190.1, AT3G15070.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011416m.g.v1.0, Thhalv10020603m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g39770.v2.2, Sp3g13270.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g049950.2N, BniB04g056140.2N, BniB06g027570.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0999 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1116, Cgl01G1171 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g11530 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g13010 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9232 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1533 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00009127, Pov_00030986 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb6G32328, Lb6G32332 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.2682, AH05.1396, BH02.2759, BH05.1565, CH02.3777 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0027930, gene-QOZ80_1BG0078100 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0088310.1, HORVU.MOREX.r3.3HG0278640.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_015453, gene-QYE76_054471 |
| Poaceae | Oryza coarctata | 3 | Oco01G016740, Oco02G016950, Oco10G016640 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g47740.1, LOC_Os05g48970.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G224500, gene-BS78_09G235600 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0102587, Pt_Chr0202257, Pt_Chr0204411, Pt_Chr0605089 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr01G015650, Chr02G013270, Chr03G013080, Chr05G020480 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G650600, Tel3E01G412700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG058690, gene_TRIDC1BG067560 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G398300.8, TraesCS1B02G426200.9 ... |
| Poaceae | Zea mays | 4 | Zm00001eb295900_P001, Zm00001eb343770_P001 ... |
| Poaceae | Zoysia japonica | 5 | nbis-gene-13655, nbis-gene-13656, nbis-gene-26028 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g10837, Zma_g27381, Zma_g8398 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.772, evm.TU.LG09.1945 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g21210 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.175, evm.TU.Scaffold_9_RagTag.157 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-11149, nbisL1-mrna-11156, nbisL1-mrna-21803 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2773, nbisL1-mrna-9755 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10613, nbisL1-mrna-7544 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.108, evm.TU.utg000006l.110 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00013858, Maker00017724 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-6734, nbisL1-mrna-9132 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-21685, nbisL1-mrna-7128 |
| Salicaceae | Populus euphratica | 2 | populus_peu00841, populus_peu17775 |
| Solanaceae | Lycium barbarum | 5 | gene-LOC132617654, gene-LOC132618987, gene-LOC132618988 ... |
| Solanaceae | Solanum chilense | 3 | SOLCI003394200, SOLCI003587300, SOLCI006048100 |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107002485, gene-LOC107007546, gene-LOC107024689 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.3333_chr01_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0147 |
| Zosteraceae | Zostera marina | 1 | Zosma06g12460.v3.1 |