Basic Information
Locus ID:
gene-LOC107002398
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 81021134 | 81034994 | - | gene-LOC107002398 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.73 | 149,748.92 Da | 40.55 | 75.12 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 1003 | 1043 | 1.00999E-15 | - |
| Pfam | PF16135 | Tify domain binding domain | 727 | 782 | 4.8E-13 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 937 | 986 | 1.1E-15 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 986 | 1047 | 4.32E-13 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 1076 | 1134 | 1.91E-7 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 1227 | 1320 | 4.43E-6 | IPR016181 |
| Gene3D | G3DSA:3.40.630.30 | - | 1180 | 1343 | 9.4E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1074 | 1136 | 3.5E-10 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 992 | 1057 | 3.2E-14 | IPR013083 |
| SMART | SM00249 | PHD_3 | 1077 | 1134 | 2.6E-4 | IPR001965 |
| SMART | SM00249 | PHD_3 | 1003 | 1044 | 9.5E-11 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 1075 | 1136 | 8.8314 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 1001 | 1046 | 10.2376 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 1004 | 1043 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 1078 | 1133 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 541 | 560 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 890 | 909 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 582 | 606 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 536 | 560 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_015055896.1 | uncharacterized protein LOC107002398 isoform X1 [Solanum pennellii] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology