Basic Information
Locus ID:
gene-LOC107002269
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Short Name:
UBP12
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 79525453 | 79547853 | - | gene-LOC107002269 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 131,766.66 Da | 41.86 | 80.12 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 61 | 184 | 1.58295E-36 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 202 | 530 | 4.97806E-168 | - |
| Pfam | PF00917 | MATH domain | 66 | 185 | 2.5E-17 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 629 | 881 | 1.3E-77 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 204 | 525 | 5.8E-47 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 891 | 1101 | 1.3E-57 | IPR029346 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 199 | 556 | 1.96E-97 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 60 | 193 | 1.8E-40 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 689 | 806 | 1.7E-44 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 201 | 529 | 7.8E-90 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 807 | 904 | 1.7E-25 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 57 | 200 | 6.6E-51 | IPR008974 |
| SMART | SM00061 | math_3 | 64 | 165 | 1.4E-17 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 204 | 528 | 40.117573 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 59 | 184 | 36.83213 | IPR002083 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 444 | 461 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 205 | 220 | - | IPR018200 |
| Coils | Coil | Coil | 544 | 564 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_015055706.1 | ubiquitin carboxyl-terminal hydrolase 12-like isoform X1 [Solanum pennellii] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology