Basic Information
Locus ID:
gene-LOC107002180
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 67744757 | 67757543 | + | gene-LOC107002180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 199,870.52 Da | 49.28 | 85.05 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1429 | 1841 | 4.54713E-118 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1477 | 1846 | 2.1E-80 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1421 | 1839 | 1.83E-93 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 168 | 632 | 1.48E-38 | IPR016024 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1718 | 1844 | 5.9E-32 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1369 | 1608 | 5.3E-43 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 156 | 471 | 2.4E-50 | IPR011989 |
| SMART | SM00185 | arm_5 | 243 | 284 | 73.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 200 | 241 | 71.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 326 | 364 | 14.0 | IPR000225 |
| SMART | SM00119 | hect_3 | 1440 | 1846 | 7.2E-80 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1546 | 1846 | 57.110386 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 74 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 635 | 663 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 938 | 1042 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 939 | 990 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1092 | 1125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1086 | 1125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 640 | 655 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1786 | 1805 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 997 | 1042 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1786 | 1803 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1237 | 1262 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 106 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_015055581.1 | E3 ubiquitin-protein ligase UPL3-like [Solanum pennellii] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology