Basic Information
Locus ID:
gene-LOC107001883
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 89098852 | 89104742 | - | gene-LOC107001883 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 51,340.73 Da | 40.23 | 91.70 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00268 | DEADc | 72 | 267 | 6.77279E-56 | - |
| CDD | cd18787 | SF2_C_DEAD | 290 | 435 | 6.70314E-31 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 302 | 421 | 3.6E-17 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 84 | 257 | 2.7E-29 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 92 | 436 | 3.19E-43 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 288 | 456 | 7.4E-29 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 35 | 271 | 4.4E-46 | IPR027417 |
| SMART | SM00487 | ultradead3 | 79 | 293 | 4.9E-33 | IPR014001 |
| SMART | SM00490 | helicmild6 | 339 | 423 | 1.5E-14 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 91 | 273 | 21.486883 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 302 | 459 | 13.815251 | IPR001650 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19210.2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_015055350.1 | DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 [Solanum pennellii] | 0 |
| Q3E9C3 | DEAD-box ATP-dependent RNA helicase 58, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RH58 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12536 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2645 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah020273 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg5106, Sbi_jg6889, Sbi_jg6890 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg13153 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003880 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl00050, Sgl05123, Sgl05149 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013099, gene:ENSEOMG00000032331 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0014230, CQ.Regalona.r1.3BG0014240 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30237240 |
| Apiaceae | Apium graveolens | 1 | Ag8G01633 |
| Arecaceae | Cocos nucifera | 1 | scaffold010161G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103696541 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.1804.V1.1, AsparagusV1_08.169.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G05941 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G19210.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013438m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g25180.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g053430.2N, BniB05g044490.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1036 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1081 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g05400 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0239s00015.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g26060 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1091 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00025964 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G00122, Lb1G00129 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.4644, AH07.1018, BH02.4709, BH07.1127, CH07.909 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0048090, gene-QOZ80_1BG0097990 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0327850.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_058843 |
| Poaceae | Oryza coarctata | 1 | Oco02G032100 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G417600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0601077 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr03G023950, Chr08G017660 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G882800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG074320, gene_TRIDC3BG085630 |
| Poaceae | Triticum aestivum | 2 | TraesCS3B02G592900.1, TraesCS3D02G530600.1 |
| Poaceae | Zea mays | 1 | Zm00001eb362300_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-10757 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9436 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1700, evm.TU.LG11.1058 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g11350 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.473, evm.TU.Scaffold_3_RagTag.474 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6465 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-6199, nbisL1-mrna-6200 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.935 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012809 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6333 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2097 |
| Salicaceae | Populus euphratica | 1 | populus_peu21344 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644973 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107001883 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8463 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1425 |
| Zosteraceae | Zostera marina | 1 | Zosma01g20600.v3.1 |