Basic Information
Locus ID:
gene-LOC107001825
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Short Name:
NTMC2T4.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 5945811 | 5951128 | + | gene-LOC107001825 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 54,448.74 Da | 31.69 | 102.80 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 265 | 359 | 3.03064E-28 | - |
| Pfam | PF00168 | C2 domain | 263 | 359 | 6.3E-24 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 68 | 247 | 1.1E-19 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 261 | 390 | 3.42E-30 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 258 | 416 | 2.7E-33 | IPR035892 |
| SMART | SM00239 | C2_3c | 264 | 361 | 1.7E-22 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 66 | 248 | 24.116596 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 246 | 364 | 21.180769 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 327 | 335 | 9.1E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 280 | 292 | 9.1E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 305 | 318 | 9.1E-6 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 493 | - | - |
| Coils | Coil | Coil | 390 | 410 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_015055271.1 | synaptotagmin-5-like [Solanum pennellii] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology