Basic Information
Locus ID:
gene-LOC107001810
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Short Name:
UBC5
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 4852656 | 4907039 | + | gene-LOC107001810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.85 | 15,868.42 Da | 33.12 | 105.83 | 0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 29 | 126 | 5.3514E-34 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 22 | 126 | 2.0E-27 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 27 | 127 | 5.65E-31 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 14 | 130 | 2.6E-31 | IPR016135 |
| SMART | SM00212 | ubc_7 | 3 | 134 | 2.3E-18 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 134 | 28.448307 | IPR000608 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G63800.2 | - | 0 |
| RefSeq | XP_027768265.1 | ubiquitin-conjugating enzyme E2 5-like [Solanum pennellii] | 0 |
| P42749 | Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana OX=3702 GN=UBC5 PE=2 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology