Basic Information
Locus ID:
gene-LOC107001654
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 81190053 | 81190742 | + | gene-LOC107001654 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 25,512.95 Da | 50.99 | 68.61 | -0.88 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 171 | 212 | 3.54553E-16 | - |
| Pfam | PF13639 | Ring finger domain | 170 | 212 | 2.6E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 170 | 215 | 5.3E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 138 | 216 | 3.2E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 171 | 211 | 2.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 171 | 212 | 12.577796 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 50 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53190.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_027768080.1 | E3 ubiquitin-protein ligase RNF6-like [Solanum pennellii] | 0 |
| Q5QLR5 | Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza sativa subsp. japonica OX=39947 GN=ZFP1 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Solanum chilense | 1 | SOLCI000103300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107001653, gene-LOC107001654 |