Basic Information
Locus ID:
gene-LOC107001174
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 108593245 | 108604753 | + | gene-LOC107001174 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 203,213.23 Da | 47.55 | 85.70 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1478 | 1888 | 7.85611E-119 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1560 | 1893 | 1.0E-79 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 193 | 662 | 3.96E-42 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1470 | 1886 | 7.06E-95 | IPR035983 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1764 | 1891 | 1.1E-32 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 183 | 503 | 3.5E-52 | IPR011989 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1418 | 1660 | 4.7E-45 | - |
| SMART | SM00119 | hect_3 | 1489 | 1893 | 2.1E-84 | IPR000569 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 236 | 264 | 8.5574 | IPR000225 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1563 | 1893 | 57.125885 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 670 | 727 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1081 | 1116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 525 | 544 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1055 | 1080 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 983 | 1170 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1138 | 1170 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1283 | 1313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 983 | 1022 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_015054811.1 | E3 ubiquitin-protein ligase UPL3 [Solanum pennellii] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology