Basic Information
Locus ID:
gene-LOC103724379
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 14262544 | 14283667 | - | gene-LOC103724379 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.20 | 51,457.45 Da | 58.08 | 65.46 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 325 | 347 | 2.8E-8 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 285 | 312 | 3.9E-6 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 319 | 352 | 7.06E-7 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 277 | 311 | 2.63E-6 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 319 | 352 | 2.0E-13 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 275 | 314 | 7.1E-13 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 353 | 386 | 1.3E-9 | - |
| SMART | SM00547 | zf_4 | 325 | 349 | 2.2E-7 | IPR001876 |
| SMART | SM00547 | zf_4 | 286 | 310 | 5.2E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 358 | 382 | 0.07 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 356 | 385 | 9.64205 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 284 | 313 | 9.721095 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 323 | 352 | 10.601887 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 327 | 346 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 360 | 379 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 278 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 412 | 427 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 276 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 428 | 448 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 458 | - | - |
| Coils | Coil | Coil | 228 | 248 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_038984910.1 | zinc finger protein VAR3, chloroplastic [Phoenix dactylifera] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8B9AES5 | zinc finger protein VAR3, chloroplastic OS=Phoenix dactylifera OX=42345 GN=LOC103724379 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology