Basic Information
Locus ID:
gene-LOC103724208
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
High mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 11830059 | 11853524 | + | gene-LOC103724208 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 52,890.01 Da | 47.92 | 65.96 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 62 | 147 | 5.47212E-48 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 278 | 342 | 2.04899E-20 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 65 | 147 | 5.2E-16 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 278 | 345 | 7.9E-16 | IPR009071 |
| SUPERFAMILY | SSF46774 | ARID-like | 58 | 157 | 2.88E-28 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 266 | 352 | 3.27E-21 | IPR036910 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 262 | 358 | 3.8E-22 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 46 | 157 | 1.2E-25 | IPR036431 |
| SMART | SM01014 | ARID_2 | 57 | 147 | 1.1E-26 | - |
| SMART | SM00501 | bright_3 | 61 | 152 | 2.8E-28 | IPR001606 |
| SMART | SM00398 | hmgende2 | 277 | 346 | 1.4E-17 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 60 | 151 | 24.923512 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 278 | 345 | 15.31035 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 435 | 473 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 283 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 473 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 275 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_026656211.2 | high mobility group B protein 15-like [Phoenix dactylifera] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B9ASM2 | high mobility group B protein 15-like OS=Phoenix dactylifera OX=42345 GN=LOC103724208 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology