Basic Information
Locus ID:
gene-LOC103723980
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 17805850 | 17824576 | - | gene-LOC103723980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 152,050.94 Da | 51.84 | 76.74 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 618 | 950 | 3.94615E-84 | - |
| CDD | cd18793 | SF2_C_SNF | 1224 | 1331 | 6.33755E-52 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 636 | 1027 | 4.1E-66 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1221 | 1321 | 6.5E-15 | IPR001650 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 1066 | 1103 | 2.6E-5 | IPR018957 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 603 | 950 | 8.4E-44 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 960 | 1378 | 9.91E-53 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1065 | 1114 | 8.25E-10 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 590 | 677 | 8.5E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 713 | 801 | 6.5E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 802 | 960 | 1.9E-29 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 1151 | 1379 | 7.4E-54 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1063 | 1119 | 8.9E-9 | IPR013083 |
| SMART | SM00184 | ring_2 | 1066 | 1104 | 5.5E-4 | IPR001841 |
| SMART | SM00490 | helicmild6 | 1238 | 1321 | 1.0E-14 | IPR001650 |
| SMART | SM00487 | ultradead3 | 614 | 929 | 1.0E-28 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 633 | 912 | 12.684525 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1066 | 1105 | 10.615647 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1215 | 1374 | 14.283315 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 1081 | 1090 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 813 | 835 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 450 | 482 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1174 | 1193 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 447 | 482 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 797 | 835 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_038981664.1 | helicase-like transcription factor CHR28 isoform X1 [Phoenix dactylifera] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B9AEK3 | helicase-like transcription factor CHR28 isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103723980 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology