Basic Information
Locus ID:
gene-LOC103723948
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 18191816 | 18207905 | - | gene-LOC103723948 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 53,945.12 Da | 58.32 | 68.47 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 114 | 166 | 1.09201E-30 | - |
| Pfam | PF12315 | Protein DA1 | 263 | 471 | 1.2E-103 | IPR022087 |
| Pfam | PF00412 | LIM domain | 114 | 168 | 7.1E-9 | IPR001781 |
| Pfam | PF02809 | Ubiquitin interaction motif | 74 | 87 | 0.44 | IPR003903 |
| Pfam | PF02809 | Ubiquitin interaction motif | 44 | 58 | 0.049 | IPR003903 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 106 | 139 | 1.48E-8 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 140 | 195 | 3.76E-8 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 109 | 187 | 4.1E-14 | - |
| SMART | SM00726 | uim | 43 | 62 | 0.028 | IPR003903 |
| SMART | SM00132 | lim_4 | 113 | 165 | 9.9E-11 | IPR001781 |
| SMART | SM00726 | uim | 74 | 93 | 0.05 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 74 | 93 | 10.02609 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 112 | 172 | 12.1375 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 43 | 62 | 9.865632 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 114 | 148 | - | IPR001781 |
| Coils | Coil | Coil | 56 | 77 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_038983617.1 | protein DA1-related 1-like isoform X1 [Phoenix dactylifera] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A8B9AK02 | protein DA1-related 1-like isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103723948 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology