Basic Information
Locus ID:
gene-LOC103723801
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
High mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 14226281 | 14230718 | + | gene-LOC103723801 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.60 | 46,068.78 Da | 48.64 | 72.20 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 310 | 374 | 1.75391E-19 | - |
| CDD | cd16872 | ARID_HMGB9-like | 57 | 142 | 2.52783E-47 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 310 | 377 | 1.2E-14 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 59 | 142 | 1.6E-20 | IPR001606 |
| SUPERFAMILY | SSF47095 | HMG-box | 307 | 380 | 8.51E-20 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 49 | 154 | 3.01E-32 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 293 | 390 | 2.2E-20 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 30 | 151 | 3.5E-29 | IPR036431 |
| SMART | SM00398 | hmgende2 | 309 | 378 | 6.0E-16 | IPR009071 |
| SMART | SM01014 | ARID_2 | 52 | 142 | 4.6E-32 | - |
| SMART | SM00501 | bright_3 | 56 | 147 | 4.3E-32 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 310 | 377 | 15.741228 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 55 | 146 | 27.415747 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 315 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 33 | - | - |
| Coils | Coil | Coil | 366 | 386 | - | - |
| Coils | Coil | Coil | 19 | 39 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_026656041.1 | high mobility group B protein 9-like [Phoenix dactylifera] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B8IYQ4 | high mobility group B protein 9-like OS=Phoenix dactylifera OX=42345 GN=LOC103723801 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology