Basic Information
Locus ID:
gene-LOC103723715
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Lycopene cyclase protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 1711103 | 1719002 | + | gene-LOC103723715 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.69 | 60,153.92 Da | 51.76 | 92.61 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05834 | Lycopene cyclase protein | 117 | 514 | 5.8E-152 | - |
| SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | 115 | 508 | 3.58E-22 | IPR036188 |
| Gene3D | G3DSA:3.50.50.60 | - | 115 | 434 | 1.4E-16 | IPR036188 |
| TIGRFAM | TIGR01790 | carotene-cycl: lycopene cyclase family protein | 117 | 515 | 1.3E-139 | IPR010108 |
| PRINTS | PR00411 | Pyridine nucleotide disulphide reductase class-I signature | 247 | 256 | 6.9E-6 | - |
| PRINTS | PR00411 | Pyridine nucleotide disulphide reductase class-I signature | 117 | 139 | 6.9E-6 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57030.1 | Lycopene beta/epsilon cyclase protein. Lutein-deficient 2 (LUT2) required for lutein biosynthesis, member of the xanthophyll class of carotenoids. Encodes lycopene epsilon cyclase | 0 |
| RefSeq | XP_008812953.2 | lycopene epsilon cyclase, chloroplastic [Phoenix dactylifera] | 0 |
| D9IL24 | Lycopene epsilon cyclase, chloroplastic OS=Oncidium hybrid cultivar OX=141207 GN=LCY-E PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7D4H0 | lycopene epsilon cyclase, chloroplastic OS=Phoenix dactylifera OX=42345 GN=LOC103723715 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31730 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9353 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015194 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg24602, Sbi_jg8459, Sbi_jg8461 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg13409, Seu_jg28725 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014731 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42897, Sgl47689 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011696, gene:ENSEOMG00000032821 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.8AG0014930, CQ.Regalona.r1.8BG0016280 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30259630 |
| Apiaceae | Apium graveolens | 1 | Ag8G00262 |
| Arecaceae | Cocos nucifera | 1 | scaffold011582G000050 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723715 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.2962.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G12895 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G57030.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013234m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g18740.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g036220.2N, BniB08g014050.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0832 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0858 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g01010 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0472s00012.v1.0, Dusal.0598s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g14300 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1264 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004091 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16948 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2127, BH02.2198, CH02.2350 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0021950, gene-QOZ80_1BG0071910 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0267830.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_053469 |
| Poaceae | Oryza coarctata | 2 | Oco01G013230, Oco02G013380 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g39960.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G173800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0603119, Pt_Chr0603126 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr03G009600, Chr05G017030, Chr08G009950 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G362900 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G208800.1, TraesCS3B02G239100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb357090_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-29416 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g8113 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2348, evm.TU.LG23.581 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g10300 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1816 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25761 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20185 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4608 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1024 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000239 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14860 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1113 |
| Salicaceae | Populus euphratica | 1 | populus_peu11913 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636893 |
| Solanaceae | Solanum chilense | 1 | SOLCI004414300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007293 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_17640 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1794 |
| Zosteraceae | Zostera marina | 1 | Zosma01g03320.v3.1 |