Basic Information
Locus ID:
gene-LOC103723507
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Belongs to the cyclin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 7429044 | 7440659 | + | gene-LOC103723507 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.04 | 51,388.93 Da | 47.70 | 67.33 | -1.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00043 | CYCLIN | 160 | 247 | 2.12089E-8 | IPR013763 |
| CDD | cd00043 | CYCLIN | 35 | 109 | 3.33214E-14 | IPR013763 |
| Pfam | PF00134 | Cyclin, N-terminal domain | 11 | 154 | 8.2E-13 | IPR006671 |
| SUPERFAMILY | SSF47954 | Cyclin-like | 4 | 154 | 6.81E-38 | IPR036915 |
| SUPERFAMILY | SSF47954 | Cyclin-like | 159 | 259 | 1.85E-29 | IPR036915 |
| Gene3D | G3DSA:1.10.472.10 | - | 158 | 260 | 1.5E-25 | - |
| Gene3D | G3DSA:1.10.472.10 | - | 4 | 155 | 3.3E-45 | - |
| SMART | SM00385 | cyclin_7 | 163 | 245 | 2.1E-5 | IPR013763 |
| SMART | SM00385 | cyclin_7 | 40 | 150 | 4.0E-9 | IPR013763 |
| PIRSF | PIRSF036580 | Cyclin_L | 1 | 445 | 6.3E-147 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 303 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 445 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 433 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G26430.4 | - | 0 |
| RefSeq | XP_008812655.1 | cyclin-L1-1 isoform X1 [Phoenix dactylifera] | 0 |
| Q9AS36 | Cyclin-L1-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCL1-1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7D4H2 | cyclin-L1-1 isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103723507 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg35340 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12035, gene_20332 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005943 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g083180 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg16935, Sbi_jg61467 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg211 |
| Amaranthaceae | Suaeda aralocaspica | 5 | GOSA_00013044, GOSA_00013048, GOSA_00013049, GOSA_00013050 ... |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24713, Sgl29866 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000009456, gene:ENSEOMG00000029843 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.2AG0007490, CQ.Regalona.r1.4AG0009500 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30171470 |
| Apiaceae | Apium graveolens | 1 | Ag10G02381 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723507 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G28399 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G26430.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10001260m.g.v1.0, Thhalv10007728m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g23300.v2.2, Sp4g07260.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g032360.2N, BniB04g041430.2N, BniB04g041450.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1868 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1944 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g04980 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0023s00043.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g07380 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.1400, evm.TU.LG08.1035 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00000964, Pov_00039618 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G28714, Lb6G29908 |
| Poaceae | Echinochloa crus-galli | 1 | CH02.2005 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1AG0017350 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0619440.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_009472, gene-QYE76_042856 |
| Poaceae | Oryza coarctata | 1 | Oco02G010940 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g27940.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_07G038200, gene-BS78_07G064800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0303723 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G015440, Chr16G018190, Chr17G017410 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G585900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG049580, gene_TRIDC6BG058090 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G331500.1, TraesCS6B02G362300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb048550_P004, Zm00001eb307170_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-21706 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10359 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.580, evm.TU.LG22.1369 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g11260 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1647 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26101 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9128 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4459 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.908 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000283 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2143 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9530 |
| Salicaceae | Populus euphratica | 2 | populus_peu06315, populus_peu20145 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132598692, gene-LOC132599557, gene-LOC132645204 |
| Solanaceae | Solanum chilense | 1 | SOLCI002882900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007733 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.28410_chr04_+, gene_8213 |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G3537, TC02G3546 |
| Zosteraceae | Zostera marina | 1 | Zosma04g01170.v3.1 |