Basic Information
Locus ID:
gene-LOC103723480
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
GHMP kinases C terminal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 2917691 | 2922316 | - | gene-LOC103723480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.21 | 38,547.86 Da | 35.98 | 90.95 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08544 | GHMP kinases C terminal | 272 | 349 | 4.8E-10 | IPR013750 |
| Pfam | PF00288 | GHMP kinases N terminal domain | 144 | 209 | 4.1E-12 | IPR006204 |
| SUPERFAMILY | SSF55060 | GHMP Kinase, C-terminal domain | 232 | 349 | 1.25E-29 | IPR036554 |
| SUPERFAMILY | SSF54211 | Ribosomal protein S5 domain 2-like | 57 | 219 | 1.37E-28 | IPR020568 |
| Gene3D | G3DSA:3.30.230.10 | - | 52 | 229 | 1.3E-46 | IPR014721 |
| Gene3D | G3DSA:3.30.70.890 | - | 230 | 362 | 3.2E-39 | IPR036554 |
| TIGRFAM | TIGR00191 | thrB: homoserine kinase | 61 | 372 | 2.0E-64 | IPR000870 |
| ProSitePatterns | PS00627 | GHMP kinases putative ATP-binding domain. | 150 | 161 | - | IPR006203 |
| PRINTS | PR00958 | Homoserine kinase signature | 65 | 80 | 1.8E-28 | - |
| PRINTS | PR00958 | Homoserine kinase signature | 157 | 172 | 1.8E-28 | - |
| PRINTS | PR00958 | Homoserine kinase signature | 236 | 253 | 1.8E-28 | - |
| PRINTS | PR00958 | Homoserine kinase signature | 196 | 209 | 1.8E-28 | - |
| PRINTS | PR00958 | Homoserine kinase signature | 316 | 331 | 1.8E-28 | - |
| Hamap | MF_00384 | Homoserine kinase [thrB]. | 58 | 372 | 27.650719 | IPR000870 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
ko00260 (Glycine, serine and threonine metabolism)
map00260 (Glycine, serine and threonine metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17265.1 | homoserine kinase. Encodes a homoserine kinase (HSK) which produces O-phospho-L-homoserine (HserP), a compound at the branching point of methionine and threonine biosynthesis. HSK is found in the stromal fraction of chloroplasts. Mutants are susceptible to downy mildew fungus Hyaloperonospora parasitica. | 0 |
| RefSeq | XP_008812621.1 | homoserine kinase [Phoenix dactylifera] | 0 |
| Q8L7R2 | Homoserine kinase OS=Arabidopsis thaliana OX=3702 GN=HSK PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7D401 | Homoserine kinase OS=Phoenix dactylifera OX=42345 GN=LOC103723480 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22666 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_21798, gene_24182 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009839 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g215700 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11226, Sbi_jg46199 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20527 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005430 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl56327, Sgl61837 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015822, gene:ENSEOMG00000038063 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0004380, CQ.Regalona.r1.9AG0020270 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30108670 |
| Apiaceae | Apium graveolens | 1 | Ag11G04488 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G005760 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723480 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.1028.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G31167 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G17265.1, AT4G35295.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022738m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g30610.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g013520.2N, BniB02g013530.2N, BniB03g065000.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1801 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl07G1958, Cgl07G1960 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno02g10430, gene.Cymno02g10480, gene.Cymno02g10520 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0015s00038.v1.0, Dusal.0015s00039.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g18750, gene.Thate01g20730 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.435 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00038219 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G38294, Lb4G21700 |
| Poaceae | Echinochloa crus-galli | 2 | AH07.4051, BH07.3867 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0151680, gene-QOZ80_2BG0207050 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0197860.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_011751, gene-QYE76_039188 |
| Poaceae | Oryza coarctata | 2 | Oco03G026290, Oco04G026720 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g58510.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G342500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0305009 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr23G016220 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G795600, Tel6E01G785800 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC2AG066720, gene_TRIDC2BG071850 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G471500.1.cds1, TraesCS2B02G494300.1.cds1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-39730 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17488 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.908, evm.TU.LG22.1017 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g11130 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.43002.2, evm.TU.Scaffold_1_RagTag.2395 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13, nbisL1-mrna-59 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19194 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3187, nbisL1-mrna-9289 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000009l.492 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005078 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-18556, nbisL1-mrna-22443 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-22519, nbisL1-mrna-24146 |
| Salicaceae | Populus euphratica | 2 | populus_peu08417, populus_peu36937 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132614124 |
| Solanaceae | Solanum chilense | 2 | SOLCI002360200, SOLCI003418100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008113, gene-LOC107018408 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_11353 |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G0275, TC12G0851 |
| Zosteraceae | Zostera marina | 1 | Zosma05g04900.v3.1 |