Basic Information
Locus ID:
gene-LOC103723464
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Short Name:
CMPG1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 13976595 | 13978052 | + | gene-LOC103723464 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.56 | 48,772.76 Da | 39.92 | 99.71 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 35 | 77 | 9.52604E-25 | - |
| Pfam | PF04564 | U-box domain | 31 | 102 | 1.3E-23 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 194 | 430 | 8.06E-20 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 28 | 105 | 1.19E-30 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 119 | 424 | 1.4E-16 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 18 | 108 | 2.0E-31 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 34 | 97 | 3.6E-35 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 30 | 104 | 45.795956 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_008812599.1 | U-box domain-containing protein 21-like [Phoenix dactylifera] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7D4E4 | RING-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC103723464 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology