Basic Information
Locus ID:
gene-LOC103723254
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Anaphase-promoting complex subunit cdc20
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold002061F | 21461 | 24882 | - | gene-LOC103723254 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.19 | 51,902.43 Da | 49.64 | 74.38 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 325 | 363 | 0.012 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 188 | 251 | 1.0E-6 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 274 | 309 | 1.1E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 413 | 448 | 0.049 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 149 | 450 | 1.18E-58 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 99 | 451 | 2.1E-119 | IPR015943 |
| SMART | SM00320 | WD40_4 | 186 | 225 | 1.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 366 | 406 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 228 | 266 | 1.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 321 | 363 | 0.004 | IPR001680 |
| SMART | SM00320 | WD40_4 | 270 | 309 | 5.0E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 409 | 448 | 2.2E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 193 | 234 | 11.878597 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 416 | 449 | 9.651964 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 193 | 230 | 8.702878 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 416 | 449 | 11.544415 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 277 | 318 | 14.41838 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 277 | 311 | 11.523771 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 296 | 310 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 435 | 449 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 475 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_038979022.1 | cell division cycle 20.2, cofactor of APC complex-like [Phoenix dactylifera] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B9A053 | cell division cycle 20.2, cofactor of APC complex-like OS=Phoenix dactylifera OX=42345 GN=LOC103723254 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology