Basic Information
Locus ID:
gene-LOC103722854
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Short Name:
RHC1A
Description:
zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold000491F | 144543 | 147024 | - | gene-LOC103722854 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.96 | 31,875.60 Da | 63.06 | 59.72 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 187 | 228 | 2.10913E-23 | - |
| Pfam | PF14369 | zinc-ribbon | 7 | 37 | 1.5E-8 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 186 | 228 | 5.0E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 167 | 234 | 1.15E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 150 | 234 | 1.6E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 187 | 227 | 1.5E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 187 | 228 | 12.282736 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 257 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_008811773.1 | probable E3 ubiquitin-protein ligase RHC1A [Phoenix dactylifera] | 0 |
| Q94AK4 | E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7D322 | RING-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC103722854 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology