Basic Information
Locus ID:
gene-LOC103722740
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 8100466 | 8118300 | + | gene-LOC103722740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.65 | 65,571.28 Da | 41.02 | 95.27 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 264 | 556 | 7.93497E-47 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 519 | 556 | 5.4E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 263 | 298 | 7.9E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 476 | 513 | 0.013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 348 | 386 | 0.0033 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 259 | 556 | 2.9E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 251 | 520 | 3.0E-55 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 521 | 580 | 8.4E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 472 | 514 | 1.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 305 | 344 | 1.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 388 | 428 | 230.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 347 | 386 | 3.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 260 | 299 | 1.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 517 | 557 | 9.9E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 430 | 468 | 110.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 267 | 308 | 14.084198 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 312 | 345 | 9.361965 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 94 | 151 | 8.265195 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 267 | 300 | 11.444681 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 524 | 559 | 11.681953 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 524 | 566 | 14.284707 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 61 | 93 | 7.987474 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 312 | 353 | 12.279615 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 365 | 388 | 8.503359 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 286 | 300 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 373 | 387 | 2.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 544 | 558 | 2.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 286 | 300 | 2.4E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_038970339.1 | WD repeat-containing protein 26 homolog [Phoenix dactylifera] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B8ZEP2 | WD repeat-containing protein 26 homolog OS=Phoenix dactylifera OX=42345 GN=LOC103722740 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology